mirror of
https://github.com/SikongJueluo/Mini-Nav.git
synced 2026-07-12 20:15:31 +08:00
feat: vectorize CAM retrieval with NumPy and add multi-worker support
- Replace scalar hamming distance with NumPy bitwise_count for batch retrieval - Add ThreadPoolExecutor-based multi-worker query parallelism - Improve missing dataset error message with generation command hint - Increase DEFAULT_MAX_QUERIES from 128 to 8192 for meaningful throughput tests
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@@ -3,12 +3,14 @@ from __future__ import annotations
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import argparse
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import csv
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import json
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import re
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import sys
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import time
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from concurrent.futures import ThreadPoolExecutor
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from dataclasses import dataclass
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from datetime import datetime
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from pathlib import Path
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from typing import Callable, Iterable, Sequence
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from typing import Callable, Iterable
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import numpy as np
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@@ -28,6 +30,8 @@ class RetrievalDataset:
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row_labels: list[int]
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queries: list[int]
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query_labels: list[int]
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rows_words: np.ndarray
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queries_words: np.ndarray
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hash_bits: int
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num_classes: int
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positives_per_class: int = 0
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@@ -76,6 +80,31 @@ def project_root() -> Path:
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return PROJECT_ROOT
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def missing_dataset_message(dataset_path: Path) -> str:
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message = f"retrieval dataset not found: {dataset_path}"
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match = re.fullmatch(
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r"(?P<dataset>cifar10|cifar100)_hash(?P<hash_bits>\d+)_rows(?P<num_rows>\d+)_queries(?P<max_queries>\d+)\.npz",
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dataset_path.name,
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)
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if match is None:
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return message
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groups = match.groupdict()
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command = (
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"python scripts/prepare_cam_retrieval_dataset.py "
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f"--dataset {groups['dataset']} "
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f"--num-rows {groups['num_rows']} "
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f"--max-queries {groups['max_queries']} "
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f"--hash-bits {groups['hash_bits']}"
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)
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return (
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f"{message}\n"
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"The requested benchmark artifact has not been generated yet. "
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"Create it first, then rerun this benchmark:\n"
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f" {command}"
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)
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def words_le_to_int(words: np.ndarray) -> int:
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value = 0
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for idx, word in enumerate(words.tolist()):
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@@ -88,7 +117,7 @@ def load_retrieval_dataset_npz(path: str | Path) -> RetrievalDataset:
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if not dataset_path.is_absolute():
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dataset_path = project_root() / dataset_path
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if not dataset_path.exists():
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raise FileNotFoundError(f"retrieval dataset not found: {dataset_path}")
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raise FileNotFoundError(missing_dataset_message(dataset_path))
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loaded = np.load(dataset_path)
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rows_words = loaded["rows_words"]
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@@ -98,6 +127,8 @@ def load_retrieval_dataset_npz(path: str | Path) -> RetrievalDataset:
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if rows_words.shape[1] != queries_words.shape[1]:
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raise ValueError("rows_words and queries_words must use the same word width")
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rows_words = np.asarray(rows_words, dtype=np.uint64)
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queries_words = np.asarray(queries_words, dtype=np.uint64)
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rows = [words_le_to_int(words) for words in rows_words]
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queries = [words_le_to_int(words) for words in queries_words]
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row_labels = [int(x) for x in loaded["row_labels"].tolist()]
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@@ -107,28 +138,85 @@ def load_retrieval_dataset_npz(path: str | Path) -> RetrievalDataset:
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row_labels=row_labels,
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queries=queries,
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query_labels=query_labels,
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rows_words=rows_words,
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queries_words=queries_words,
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hash_bits=int(rows_words.shape[1] * 64),
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num_classes=len(set(row_labels)),
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)
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def hamming_similarity_score(query_row: int, stored_row: int, *, width: int) -> int:
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if width <= 0:
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raise ValueError("width must be greater than 0")
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mask = (1 << width) - 1
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distance = ((int(query_row) ^ int(stored_row)) & mask).bit_count()
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return int(width - distance)
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def match_topk_hamming(query: int, rows: Sequence[int], *, width: int, k: int) -> list[int]:
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def match_topk_numpy(query_words: np.ndarray, rows_words: np.ndarray, *, width: int, k: int) -> list[int]:
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if k <= 0:
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raise ValueError("k must be greater than 0")
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scored = [
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(-hamming_similarity_score(query, row, width=width), row_index)
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for row_index, row in enumerate(rows)
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if width <= 0:
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raise ValueError("width must be greater than 0")
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query_words = np.asarray(query_words, dtype=np.uint64)
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rows_words = np.asarray(rows_words, dtype=np.uint64)
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if rows_words.ndim != 2:
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raise ValueError("rows_words must have shape [N, words]")
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if query_words.shape != (rows_words.shape[1],):
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raise ValueError("query_words must have shape [words]")
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return _match_topk_numpy_batch(query_words[np.newaxis, :], rows_words, width=width, k=k)[0]
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def _match_topk_numpy_batch(
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queries_words: np.ndarray,
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rows_words: np.ndarray,
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*,
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width: int,
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k: int,
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) -> list[list[int]]:
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if k <= 0:
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raise ValueError("k must be greater than 0")
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if width <= 0:
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raise ValueError("width must be greater than 0")
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queries_words = np.asarray(queries_words, dtype=np.uint64)
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rows_words = np.asarray(rows_words, dtype=np.uint64)
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if queries_words.ndim != 2:
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raise ValueError("queries_words must have shape [Q, words]")
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if rows_words.ndim != 2:
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raise ValueError("rows_words must have shape [N, words]")
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if queries_words.shape[1] != rows_words.shape[1]:
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raise ValueError("queries_words and rows_words must use the same word width")
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xor = np.bitwise_xor(queries_words[:, np.newaxis, :], rows_words[np.newaxis, :, :])
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distances = np.bitwise_count(xor).sum(axis=2, dtype=np.int64)
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scores = int(width) - distances
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row_indices = np.arange(rows_words.shape[0], dtype=np.int64)
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topk_count = min(k, rows_words.shape[0])
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return [
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[int(idx) for idx in np.lexsort((row_indices, -score_row))[:topk_count]]
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for score_row in scores
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]
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scored.sort()
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return [row_index for _, row_index in scored[: min(k, len(scored))]]
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def match_all_topk_numpy(
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queries_words: np.ndarray,
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rows_words: np.ndarray,
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*,
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width: int,
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k: int,
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workers: int = 1,
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) -> list[list[int]]:
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if workers <= 0:
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raise ValueError("workers must be greater than 0")
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queries_words = np.asarray(queries_words, dtype=np.uint64)
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if workers == 1 or len(queries_words) <= 1:
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return _match_topk_numpy_batch(queries_words, rows_words, width=width, k=k)
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chunks = [
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chunk
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for chunk in np.array_split(queries_words, min(workers, len(queries_words)))
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if len(chunk)
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]
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with ThreadPoolExecutor(max_workers=workers) as executor:
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futures = [
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executor.submit(_match_topk_numpy_batch, chunk, rows_words, width=width, k=k)
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for chunk in chunks
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]
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parts = [future.result() for future in futures]
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return [topk for part in parts for topk in part]
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def compute_metrics(topk_indices: list[int], row_labels: list[int], query_label: int, k: int) -> tuple[float, float, float]:
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@@ -154,6 +242,7 @@ def run_benchmark(
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hash_bits: int = 512,
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topk_values: Iterable[int] = BENCHMARK_KS,
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run_id: str | None = None,
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workers: int = 1,
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timer_ns: Callable[[], int] = time.perf_counter_ns,
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) -> dict:
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dataset = load_retrieval_dataset_npz(dataset_path)
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@@ -165,6 +254,8 @@ def run_benchmark(
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)
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if len(dataset.queries) != len(dataset.query_labels):
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raise ValueError("queries and query_labels must have the same length")
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if workers <= 0:
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raise ValueError("workers must be greater than 0")
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ks = _normalized_topk_values(topk_values)
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max_k = max(ks)
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@@ -172,10 +263,13 @@ def run_benchmark(
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raise ValueError("topk_values cannot exceed the number of dataset rows")
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start_ns = timer_ns()
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all_topk = [
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match_topk_hamming(query, dataset.rows, width=hash_bits, k=max_k)
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for query in dataset.queries
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]
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all_topk = match_all_topk_numpy(
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dataset.queries_words,
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dataset.rows_words,
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width=hash_bits,
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k=max_k,
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workers=workers,
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)
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end_ns = timer_ns()
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golden_topk = [
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@@ -198,16 +292,18 @@ def run_benchmark(
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num_queries = len(dataset.queries)
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ns_per_query = (elapsed_ns / float(num_queries)) if num_queries else 0.0
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qps = (1_000_000_000.0 / ns_per_query) if ns_per_query > 0 else 0.0
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resolved_run_id = run_id or f"{datetime.now().strftime('%Y-%m-%d-%H%M%S')}-software-hamming"
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resolved_run_id = run_id or f"{datetime.now().strftime('%Y-%m-%d-%H%M%S')}-software-numpy"
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return {
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"run_id": resolved_run_id,
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"mode": "software-hamming",
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"mode": "software-numpy",
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"status": "pass",
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"params": {
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"num_rows": len(dataset.rows),
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"hash_bits": int(hash_bits),
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"topk_k": max_k,
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"workers": int(workers),
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"engine": "numpy",
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},
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"dataset": {
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"num_classes": dataset.num_classes,
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@@ -231,7 +327,7 @@ def write_outputs(out_dir: Path, result: dict) -> None:
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(out_dir / "metrics.json").write_text(json.dumps(result, indent=2, sort_keys=True) + "\n", encoding="utf-8")
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fieldnames = [
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"run_id", "mode", "num_rows", "hash_bits", "topk_k", "num_queries", "k",
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"run_id", "mode", "num_rows", "hash_bits", "topk_k", "workers", "engine", "num_queries", "k",
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"macro_precision", "retrieval_recall", "macro_f1", "recall@k", "exact_match_rate",
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"total_elapsed_ns", "ns_per_query", "queries_per_second", "status",
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]
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@@ -245,6 +341,8 @@ def write_outputs(out_dir: Path, result: dict) -> None:
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"num_rows": result["params"]["num_rows"],
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"hash_bits": result["params"]["hash_bits"],
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"topk_k": result["params"]["topk_k"],
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"workers": result["params"].get("workers", 1),
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"engine": result["params"].get("engine", "numpy"),
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"num_queries": result["dataset"]["num_queries"],
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"k": int(k),
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"macro_precision": metrics["macro_precision"],
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@@ -265,6 +363,8 @@ def write_outputs(out_dir: Path, result: dict) -> None:
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f"- mode: `{result['mode']}`",
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f"- status: `{result['status']}`",
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f"- num_queries: `{result['dataset']['num_queries']}`",
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f"- workers: `{result['params'].get('workers', 1)}`",
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f"- engine: `{result['params'].get('engine', 'numpy')}`",
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f"- ns_per_query: `{result['performance']['ns_per_query']}`",
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f"- queries_per_second: `{result['performance']['queries_per_second']}`",
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"",
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@@ -278,7 +378,7 @@ def write_outputs(out_dir: Path, result: dict) -> None:
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)
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lines.extend([
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"",
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"说明:软件路径直接对 `.npz` 中的 CAM 行整数执行汉明距离 / XNOR-popcount 检索,不使用软件 CAM 时序仿真。",
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"说明:软件路径直接对 `.npz` 中的 little-endian uint64 words 使用 NumPy bitwise_count 执行汉明距离 / XNOR-popcount 检索,不使用软件 CAM 时序仿真。",
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])
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(out_dir / "summary.md").write_text("\n".join(lines) + "\n", encoding="utf-8")
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@@ -288,10 +388,11 @@ def output_dir_for(run_id: str, output_root: Path) -> Path:
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def parse_args() -> argparse.Namespace:
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parser = argparse.ArgumentParser(description="Run software Hamming CAM retrieval benchmark.")
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parser = argparse.ArgumentParser(description="Run NumPy software CAM retrieval benchmark.")
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parser.add_argument("--dataset", required=True, help="Prepared CAM retrieval .npz artifact")
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parser.add_argument("--hash-bits", type=int, default=512, help="Hash width in bits")
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parser.add_argument("--topk-k", type=int, default=5, help="Maximum Top-K to report; reports k=1 and this value")
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parser.add_argument("--workers", type=int, default=1, help="Number of software query worker threads")
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parser.add_argument("--run-id", default=None, help="Output run id")
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parser.add_argument(
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"--output-root",
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@@ -305,12 +406,17 @@ def parse_args() -> argparse.Namespace:
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def main() -> None:
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args = parse_args()
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topk_values = (1,) if args.topk_k == 1 else (1, args.topk_k)
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result = run_benchmark(
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args.dataset,
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hash_bits=args.hash_bits,
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topk_values=topk_values,
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run_id=args.run_id,
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)
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try:
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result = run_benchmark(
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args.dataset,
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hash_bits=args.hash_bits,
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topk_values=topk_values,
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run_id=args.run_id,
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workers=args.workers,
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)
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except FileNotFoundError as exc:
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print(str(exc), file=sys.stderr)
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raise SystemExit(2) from None
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out_dir = output_dir_for(result["run_id"], args.output_root)
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write_outputs(out_dir, result)
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print(
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@@ -318,6 +424,7 @@ def main() -> None:
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f"run_id={result['run_id']} "
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f"num_rows={result['params']['num_rows']} "
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f"hash_bits={result['params']['hash_bits']} "
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f"workers={result['params']['workers']} "
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f"num_queries={result['dataset']['num_queries']} "
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f"ns_per_query={result['performance']['ns_per_query']:.3f} "
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f"queries_per_second={result['performance']['queries_per_second']:.3f} "
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